Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs17401650 chr2:178791827 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs17401671 chr2:178792128 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs17401860 chr2:178804971 G/T 4.14E-5 494 30.78 32.28 20.48 KM Plot
PRAD rs17403220 chr7:135191705 A/G 2.02E-9 488 30.77 32.52 8.75 KM Plot
PRAD rs17479687 chr7:135074833 C/G 1.74E-9 494 30.8 31.33 3.03 KM Plot
PRAD rs17555056 chr19:49999647 C/G 4.46E-5 484 30.33 33.1 26.8 KM Plot
PRAD rs17614871 chr6:52843758 T/A 0.00013 488 31.28 29.2 25.92 KM Plot
PRAD rs17622207 chr4:165643309 T/G 5.67E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs17622224 chr4:165644643 A/G 5.56E-5 494 30.75 33.13 44.32 KM Plot
PRAD rs17622235 chr4:165644825 G/A 5.56E-5 493 30.77 33.13 44.32 KM Plot
PRAD rs17622247 chr4:165646228 G/A 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs17622253 chr4:165646384 C/G 5.68E-5 492 30.77 32.9 44.32 KM Plot
PRAD rs17629935 chr8:8619381 A/T 2.25E-5 494 32.5 25.67 26.23 KM Plot
PRAD rs17635194 chr15:95513696 C/T 8.01E-7 494 31.07 29.92 20.6 KM Plot
PRAD rs17663218 chr6:111501006 C/T 6.38E-6 484 31.27 31.15 20.53 KM Plot